View source for Ontology for CRAN packages 2 -- error

PID (if applicable): No

<span id="problem-statement"></span>
== Problem Statement ==

building an ontology

<span id="object-of-research-and-objective"></span>
=== Object of Research and Objective ===

building an ontology

<span id="procedure"></span>
=== Procedure ===

I build the ontology with the help of Protégé and <math>kglab</math> package for building the ontology. <br /> I make a suggestion to CRAN to use this and enrich the package repository.

<span id="involved-disciplines"></span>
=== Involved Disciplines ===

<b>Mathematical Areas:</b>

1 - [https://staging.mardi4nfdi.org/wiki/Item:Q53 knowledge graph]

<b>Non-Mathematical Disciplines:</b>

1 - [https://staging.mardi4nfdi.org/wiki/Item:Q7 software package]<br/> 2 - [https://staging.mardi4nfdi.org/wiki/Item:Q52 package repository]

<span id="data-streams"></span>
=== Data Streams ===

ontology from computer/information science to information science

<span id="model"></span>
== Model ==

ID: mardi:[https://staging.mardi4nfdi.org/wiki/Item:Q42 Q42]

ontology

specification of a conceptualization in computer science and information science

<span id="discretization"></span>
=== Discretization ===

(if applicable)

* Time: No
* Space: No

<span id="variables"></span>
=== Variables ===

{| class="wikitable"
!width="25%"| Name
!width="25%"| Unit
!width="25%"| Symbol
!width="25%"| dependent (measured) / independent (controlled)
|-
| These are my nodes in the knowledge graph
|
| n
|
|-
| These are the edges in my knowledge graph
|
| e
|
|-
| Already existing knowledge graphs
|
| kg
|
|}

<span id="parameter"></span>
=== Parameter ===

{| class="wikitable"
! Name
! Unit
! Symbol
|-
| numPublication
| not applicable
| nP
|-
| NumDownloaded
| not applicable
| nD
|}

<span id="process-information"></span>
== Process Information ==

<span id="process-steps"></span>
=== Process Steps ===

{| class="wikitable"
!width="12%"| Name
!width="12%"| Description
!width="12%"| Input
!width="12%"| Output
!width="12%"| Method
!width="12%"| Parameter
!width="12%"| Environment
!width="12%"| Mathematical Area
|-
| ontology development
|
| CRAN data<br/> AlgoData ontology
| ontology
| ontology development<br/> ontology concept definition
|
| WIAS laptop<br/> Protégé<br/> Python
| knowledge graph
|}

<span id="applied-methods"></span>
=== Applied Methods ===

{| class="wikitable"
!width="20%"| ID
!width="20%"| Name
!width="20%"| Process Step
!width="20%"| Parameter
!width="20%"| realised / implemented by
|-
| mardi:[https://staging.mardi4nfdi.org/wiki/Item:Q43 Q43]
| ontology development
| Building an ontology
| algodata, cran packages
| Protégé<br/> Python
|-
| mardi:[https://staging.mardi4nfdi.org/wiki/Item:Q44 Q44]
| ontology concept definition
|
|
| Python
|}

<span id="software-used"></span>
=== Software used ===

{| class="wikitable"
!width="11%"| ID
!width="11%"| Name
!width="11%"| Description
!width="11%"| Version
!width="11%"| Programming Language
!width="11%"| Dependencies
!width="11%"| versioned
!width="11%"| published
!width="11%"| documented
|-
| mardi:[https://staging.mardi4nfdi.org/wiki/Item:Q45 Q45]
| Protégé
| software for ontology engineering
| 5.6.3
| [https://staging.mardi4nfdi.org/wiki/Item:Q46 Java]<br/>
| Java Runtime Environment
| [http://protegewiki.stanford.edu/wiki/Protege_Desktop_Old_Versions Yes]
| [https://protege.stanford.edu/software.php Yes]
| [https://protege.stanford.edu/support.php#documentationSupport Yes]
|-
| mardi:[https://staging.mardi4nfdi.org/wiki/Item:Q47 Q47]
| Python
| general-purpose programming language
| 3.11
| [https://staging.mardi4nfdi.org/wiki/Item:Q48 C]<br/>[https://staging.mardi4nfdi.org/wiki/Item:Q47 Python]<br/>
| kglab<br/> rdflib<br/> sparqlwrapper
| [https://www.python.org/downloads/ Yes]
| [https://www.python.org/downloads/ Yes]
| [https://www.python.org/doc/ Yes]
|}

<span id="experimental-devicesinstruments-and-computer-hardware"></span>
=== Experimental Devices/Instruments and Computer-Hardware ===

{| class="wikitable"
!width="12%"| ID
!width="12%"| Name
!width="12%"| Description
!width="12%"| Version
!width="12%"| Part Nr
!width="12%"| Serial Nr
!width="12%"| Location
!width="12%"| Software
|-
|
| WIAS laptop
| Dell Latitude 5540
| Windows 11 Pro Version, 23H2, OS build 22631.3085, Windows Feature Experience Pack 1000.22684.1000.0
| A99B2ADC-9A61-48AC-BD3A-72B4E2984800
|
| WIAS, Berlin, Germany
| Windows 11 Pro, VSCode, Python, Protégé
|}

<span id="input-data"></span>
=== Input Data ===

{| class="wikitable"
!width="10%"| ID
!width="10%"| Name
!width="10%"| Size
!width="10%"| Data Structure
!width="10%"| Format Representation
!width="10%"| Format Exchange
!width="10%"| binary/text
!width="10%"| proprietary
!width="10%"| to publish
!width="10%"| to archive
|-
| mardi:[https://staging.mardi4nfdi.org/wiki/Item:Q50 Q50]
| CRAN data
| Medium (MB - GB)
|
|
| csv
| Text
| No
| No
| No
|-
| mardi:[https://staging.mardi4nfdi.org/wiki/Item:Q51 Q51]
| AlgoData ontology
| Small (KB - MB)
|
|
| csv
| Text
| No
| No
| No
|}

<span id="output-data"></span>
=== Output Data ===

{| class="wikitable"
!width="10%"| ID
!width="10%"| Name
!width="10%"| Size
!width="10%"| Data Structure
!width="10%"| Format Representation
!width="10%"| Format Exchange
!width="10%"| binary/text
!width="10%"| proprietary
!width="10%"| to publish
!width="10%"| to archive
|-
| mardi:[https://staging.mardi4nfdi.org/wiki/Item:Q42 Q42]
| ontology
| Small (KB - MB)
| rdf triplets
| triplets
| rdf
| Text
| No
| No
| No
|}

<span id="reproducibility"></span>
== Reproducibility ==

<span id="reproducibility-of-the-experiments-on-the-original-devicesinstrumentshardware"></span>
=== Reproducibility of the Experiments on the original Devices/Instruments/Hardware ===

Yes

<span id="reproducibility-of-the-experiments-on-other-devicesinstrumentshardware"></span>
=== Reproducibility of the Experiments on other Devices/Instruments/Hardware ===

Yes

<span id="transferability-of-the-experiments-to"></span>
=== Transferability of the Experiments to ===

knowledge graphs

<span id="legend"></span>
== Legend ==

The following abbreviations are used in the document to indicate/resolve IDs:

doi: DOI / https://dx.doi.org/

sw: swMATH / https://swmath.org/software/

wikidata: https://www.wikidata.org/wiki/

mardi: https://portal.mardi4nfdi.de/wiki/