GENCODE mouse & human transcript to gene files for txImport (Q7042): Difference between revisions
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Latest revision as of 15:17, 20 February 2025
Dataset published at Zenodo repository.
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | GENCODE mouse & human transcript to gene files for txImport |
Dataset published at Zenodo repository. |
Statements
GENCODE data downloaded for human (GRCh38p12 v28)and mouse (GRCm38p6 vM18). For each organism (human=v28, mouse=vM18), there is an R script with the commands necessary to generate the tx2gene CSV that can be read in and used with the tximport Bioconductor package for summarizing transcript abundances to the gene level. gencode.v28 = human gencode.vM18 = mouse
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1 August 2018
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