ANANSE: REMAP genome coverage (Q12354)
From MaRDI portal
Dataset published at Zenodo repository.
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | ANANSE: REMAP genome coverage |
Dataset published at Zenodo repository. |
Statements
hg38:Genome coverage in bigwig format from ReMap2022 TF ChIP-seq database (hg38). All peaks in bed format (https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/remap2022_all_macs2_hg38_v1_0.bed.gz) were computed to bigwig format using: zcat remap2022_all_macs2_hg38_v1_0.bed.gz | sed '/chrEBV/d' | cut -f 1,7,8 | bedtools slop -i - -g /hg38.fa.sizes -b 25 | sort -k 1,1 | bedtools genomecov -bg -g /hg38.fa.sizes -i - tmp.bg bedGraphToBigWig tmp.bg / hg38.fa.sizes remap2022.hg38.w50.bw rm tmp.bg hg19:Genome coverage in bigwig format from ReMap2022 TF ChIP-seq database (hg19). All peaks in bed format (https://remap.univ-amu.fr/storage/remap2022/hg19/MACS2/remap2022_all_macs2_hg19_v1_0.bed.gz) were computed to bigwig format using: zcat remap2022_all_macs2_hg19_v1_0.bed.gz | sed '/chrEBV/d' | cut -f 1,7,8 | bedtools slop -i - -g /hg19.fa.sizes -b 25 | sort -k 1,1 | bedtools genomecov -bg -g /hg19.fa.sizes -i - tmp.bg bedGraphToBigWig tmp.bg / hg19.fa.sizes remap2022.hg19.w50.bw rm tmp.bg
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1 April 2022
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