Datasets and supplemental information accompanying scANANSE (Q12366)
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Dataset published at Zenodo repository.
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| English | Datasets and supplemental information accompanying scANANSE |
Dataset published at Zenodo repository. |
Statements
This repository contains supplementary files from the paper: scANANSE: gene regulatory network and motif analysis of single-cell clustersas well as several accompanying datasets. The supplementary files: - Install_Rstudio.pdf - AnanseScanpy_equivalent.pdf The pre-processed Seuratobject and the two pre-processed Scanpy objectscan be used to run the scANANSE pipeline with: - preprocessed_PBMC.Rds - rna_PBMC.h5ad - atac_PBMC.h5ad Additionalraw data, used to construct the pre-processed objects,supplementedfrom: https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_filtered_feature_bc_matrix.h5, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz.tbi, https://atlas.fredhutch.org/data/nygc/multimodal/pbmc_multimodal.h5seura
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16 December 2022
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1.0.0
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