SRR606249 spiked with fungal and viral Illumina reads at 1x, 10X, and 100X (Q7040)
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Dataset published at Zenodo repository.
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | SRR606249 spiked with fungal and viral Illumina reads at 1x, 10X, and 100X |
Dataset published at Zenodo repository. |
Statements
SRR606249 spiked with fungal and viral Illumina reads at 1x, 10X, and 100X using the ART simulator. See also:https://osf.io/dm938/ andhttps://dahak-metagenomics.github.io/ Fungal and viral genomes used for computational spike-ins. Kingdom Organism Accession Link Fungus Candida albicans SC5314 NC_032089.1 https://www.ncbi.nlm.nih.gov/genome/?term=Candida+albicans Fungus Cryptococcus neoformans var. grubii H99 NC_026745.1 https://www.ncbi.nlm.nih.gov/genome/?term=Cryptococcus+neoformans Fungus Aspergillus fumigatus Af293 NC_007194.1 https://www.ncbi.nlm.nih.gov/genome/?term=Aspergillus+fumigatus Fungus Histoplasma capsulatum NAm1 NW_001813913.1 https://www.ncbi.nlm.nih.gov/genome/?term=Histoplasma+capsulatum Virus Human immunodeficiency virus 1 NC_001802.1 https://www.ncbi.nlm.nih.gov/genome/10319 Virus Influenza A virus (A/New York/392/2004(H3N2)) NC_007373.1 https://www.ncbi.nlm.nih.gov/genome/10290 Virus Marburg virus - Musoke, Kenya, 1980 NC_001608.3 https://www.ncbi.nlm.nih.gov/genome/5314 Virus Ebola virus - Mayinga, Zaire, 1976 NC_002549.1 https://www.ncbi.nlm.nih.gov/assembly/GCF_000848505.1/
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11 July 2018
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