This dataset corresponds to surveys carried out in Sumatra and Bangka islands, Indonesia, in June 2009 and May and August 2011 as part of Aude Verwilghen's PhD. It includes the location and description of the trap lines used to capture small mammals and the captures themselves. Site codes RRME = RA = Rama Rama Estate (Riau_2)LIBE = LI = Libo Estate (Riau_1)BPRE = PR = Bukit Perak Estate (Bangka_1)BMSE = MS = Bukit Mas Estate (Bankga_2) Capture codes Code Latin name Common name Remark 99 Unidentified (unknown) NA Unidentified (specimen no longer available: escaped, etc.) Rasp Rattus sp. Rattus species rati Rattus tiomanicus Malaysian wood rat, Malaysian field rat tugl Tupaia glis Common teeshrew masp Maxomys sp Maxomys species cano Callosciurus notatus Plantain squirrel mawh Maxomys whiteheadi Whitehead's spiny rat, Whitehead's Sundaic Maxomys rata Rattus tanezumi Oriental house rat syn: R.R. diardii susp Sundamys sp. lesp Leopoldamys sp. raex Rattus exulens Pacific rat masu Maxomys surifer Indomalayan maxomys nicr Niviventer cremoriventer Sundaic arboreal Niviventer, Dark-tailed Tree Rat sume Sundamys muelleri Muller's sundamys, Giant rat mara Maxomys rajah Rajah spiny rat, Rajah Sundaic Maxomys mahy Maxomys hylomyoides Sumatran mountain Maxomys, Sumatran spiny rat SkullMeasurements.pdf Figure of skull measurements published in Verwilghen et al. 2015 TrapsBaitCodes.png Description of trap types, baits and coding. LinesStandard.txt This file is a table that describes the 34 'standard' traplines by which small mammal specimens have been captured. Some traplines can have no capture. This is a point to consider when trapping success is computed joining the trapline table to the capture table. Those two tables can be joined using the field 'IDLine'. For more details about sampling design, trap types, distance between two traps, etc. please refer to the articles published using those data (see references on this web page). IDline trapline ID code: digits #1-2 location ID, digits #3-4 year, digits #5-6 month, digits #7-8 line ID. (see TrapsBaitCodes.png) deb_long_wgs84 longitude of the trapline beginning deb_lat_wgs84 latitude of the trapline beginning fin_long_wgs84 longitude of the trapline end fin_lat_wgs84 latitude of the trapline end altitude altitude in m TypeTrap Trap type (see TrapsBaitCodes.png) DistTrap (m) Distance between two traps Bait Type of bait (see TrapsBaitCodes.png) C1 Number of trap at control 1 C2 Number of trap at control 2 C3 Number of trap at control 3 C4 Number of trap at control 4 C5 Number of trap at control 5 C6 Number of trap at control 6 C7 Number of trap at control 7 habitat habitat type habitat_detail details on location Site see section 'Site codes' above Remarque remarks LinesNonStandard.txt This file is a table with two traplines, AD and AE, that have been mixed up. Captures have been collapsed in AD in the capture file. See the section about 'LinesStandard.txt' above for column legends. Indonesia_capture.txt This file is a table that describes the 345 animals captured. As a table, it can be joined to the trapline table using the field 'IDline'. Species identification, based on morphometrics and external morphology, was made using the following references: Musser et al. (1979), Musser and Newcomb (1983), Corbet and Hill (1992), Aplin et al. (2003), Wilson and Reeder (2005), Chaval (2011). Some species were identified using DNA barcoding, with species assignation using the RodentSEA reference database available at http//www.ceropath.org/barecoding_tool/rodentsea; (Clairon et al., 2010)). Nomenclature follows Wilson and Reeder (2005). Aplin, K.P., Brown, P.B., Jacob, J., Krebs, C.J. Singleton, G.R. (2003). Field methods for rodent studies in Asia and the Indo-Pacific. Australian Centre for International Agricultural Research: Canberra, 223 p Chaval, Y. (2011). South East Asian Murines Field Guide. A compilation of documents for field identification. . Version 3. Document compiled for the Training Workshop "Rodent survey: from trapping to pathogen screening", 7-10/11/2011, Kasetart University, Thailand. CBGP: Montpellier, 205 p Clairon, N., Lepicard, D., Dumas, D., Chavernac, D., Dehne, G.A., Piry, S. et al. (2010). Rodent SEA: a web service for rodent species identification in South-East Asia. Ceropath, Available at: http://www.ceropath.org/barcoding_tool/rodentsea Corbet, G.B. Hill, J.E. (1992). The mammals of the Indomalayan Region : a systematic review. Oxford University Press: Oxford, 488 p Musser, G.G., Marshall, J.T. Boeadi, J. (1979). Definition and Contents of the Sundaic Genus Maxomys (Rodentia, Muridae). Journal of Mammalogy, 60(3):592-606 Musser, G.G. Newcomb, C. (1983). Malaysian murids and the giant rat of Sumatra. Bulletin of the American Museum of Natural History, 174:327-598 Wilson, D.E. Reeder, D.M. (2005). Mammals species of the world. A taxonomic and geographic reference. 3rd edn. Johns Hopkins University Press: Baltimore, 2,142 pp IDcapt specimen ID Labcode lab code (internal use) IDline trapline ID Captdate date of capture ControlNight night of control (1, 2, 3rd, etc. visit) SpeciesField species identified in the field SpeciesDNA species identified by DNA MaterialSampleDNA material sampled for DNA analysis LocationMaterialDNA location of the material sampled for DNA analysis (CIRAD or CBGP in Montpellier or SMARTRI in Libo) DNAsequencing DNA sequenced (yes = 1 or no = 0) Skull skull collected (yes = 1 or no = 0) Skull condition skull condition (ind if OK, some can be broken) LocationSkull location of the skull Hair hair collected (yes = 1 or no = 0) LocationHair hair location BodyMass Body mass (g) BodyLenght Body length (mm) TailLenght Tail length (mm) Hind-foot Length Hind foot length (mm) EarLenght Ear length (mm) Mammae formula Mammae formula Lens Lens number taken LocationLens Lens location LensNb Lens number weighed LensMass Lens dry weight (mg * 10) Sex 1 = male, 2 = female NbEmbryos Number of embryos JawL1 see SkullMeasurements.pdf JawL2 see SkullMeasurements.pdf JawL3 see SkullMeasurements.pdf JawL4 see SkullMeasurements.pdf JawL5 see SkullMeasurements.pdf SkullGSL see SkullMeasurements.pdf SkullIB see SkullMeasurements.pdf SkullLR see SkullMeasurements.pdf SkullCLM1-3 see SkullMeasurements.pdf SkullLD see SkullMeasurements.pdf SkullBP see SkullMeasurements.pdf Incisorsupper see SkullMeasurements.pdf Incisorslower see SkullMeasurements.pdf LongBonefemur see SkullMeasurements.pdf ShortBonefemur see SkullMeasurements.pdf 3dMolar see SkullMeasurements.pdf Remarks Remarks Dry collection if yes, location DNA_sequencing.txt Table recording data on material taken for DNA sequencing and location.
Small mammal surveys in Sumatra and Bangka islands, Indonesia (2009 & 2011)
Dataset published at Zenodo repository.